GROMACS Tutorial

Lysozyme in Water

Justin A. Lemkul, Ph.D.
Department of Pharmaceutical Sciences
University of Maryland, Baltimore

This example will guide a new user through the process of setting up a simulation system containing a protein (lysozyme) in a box of water, with ions. Each step will contain an explanation of input and output, using typical settings for general use.

This tutorial assumes you are using a GROMACS version in the 5.x series.

Start the tutorial!

Tutorials Home

These tutorials were originally written while I was a member of Dr. David Bevan's research group at Virginia Tech.

Bevan Lab Homepage

Virginia Tech Homepage

Virginia Tech Biochemistry

Site design and content copyright 2008-2014 by Justin Lemkul
Questions? Problems with the site? Comments? Send them to the Webmaster